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Data Set with Bacterial Intrinsic Resistance

Source: R/data.R
intrinsic_resistant.Rd

Data set containing defined intrinsic resistance by EUCAST of all bug-drug combinations.

Usage

intrinsic_resistant

Format

A tibble with 301 583 observations and 2 variables:

  • mo
    Microorganism ID

  • ab
    Antibiotic ID

Details

This data set is based on 'EUCAST Expert Rules' and 'EUCAST Intrinsic Resistance and Unusual Phenotypes' v3.3 (2021).

Direct download

Like all data sets in this package, this data set is publicly available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata. Please visit our website for the download links. The actual files are of course available on our GitHub repository.

They allow for machine reading EUCAST and CLSI guidelines, which is almost impossible with the MS Excel and PDF files distributed by EUCAST and CLSI.

Examples

intrinsic_resistant
#> # A tibble: 301,583 × 2
#>    mo          ab  
#>    <mo>        <ab>
#>  1 B_GRAMP     ATM 
#>  2 B_GRAMP     COL 
#>  3 B_GRAMP     NAL 
#>  4 B_GRAMP     PLB 
#>  5 B_GRAMP     TEM 
#>  6 B_ANAER-POS ATM 
#>  7 B_ANAER-POS COL 
#>  8 B_ANAER-POS NAL 
#>  9 B_ANAER-POS PLB 
#> 10 B_ANAER-POS TEM 
#> # ℹ 301,573 more rows