Data Set Denoting Bacterial Intrinsic Resistance

Data set containing 'EUCAST Expected Resistant Phenotypes' of all bug-drug combinations between the microorganisms and antimicrobials data sets.

Usage

intrinsic_resistant

Format

A tibble with 271 905 observations and 2 variables:

• mo
  Microorganism ID which occurs in microorganisms$mo. Names can be retrieved using mo_name().

• ab
  Antimicrobial ID which occurs in antimicrobials$ab. Names can be retrieved using ab_name().

Details

This data set is currently based on 'EUCAST Expected Resistant Phenotypes' v1.2 (2023).

This data set is internally used by:

• not_intrinsic_resistant() (an antimicrobial selector)

• mo_is_intrinsic_resistant()

Download Our Reference Data

All reference data sets in the AMR package - including information on microorganisms, antimicrobials, and clinical breakpoints - are freely available for download in multiple formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata.

For maximum compatibility, we also provide machine-readable, tab-separated plain text files suitable for use in any software, including laboratory information systems.

Visit our website for direct download links, or explore the actual files in our GitHub repository.

Examples

intrinsic_resistant
#> # A tibble: 271,905 × 2
#>    mo          ab  
#>    <mo>        <ab>
#>  1 B_GRAMP     ATM 
#>  2 B_GRAMP     COL 
#>  3 B_GRAMP     NAL 
#>  4 B_GRAMP     PLB 
#>  5 B_GRAMP     TEM 
#>  6 B_ANAER-POS ATM 
#>  7 B_ANAER-POS COL 
#>  8 B_ANAER-POS NAL 
#>  9 B_ANAER-POS PLB 
#> 10 B_ANAER-POS TEM 
#> # ℹ 271,895 more rows